Hi
I used the followinf commando line optin for make_average_subjects
--fsgd gender_age.fsgd --out fsaverage. I have now used chmod -R +w * to
add write permission to the dir below. As a matter of fate I ran
make_average_subject --subjects 004 --out test and got the same error as
before.
Knut J
On 03/31/2011 03:16 PM, Bruce Fischl wrote:
can you run ls -l to check that that file exists and you have permission
to it? Also, we need the command line you ran and the error you got in
order to help you.
cheers
Bruce
On Thu, 31 Mar 2011, Knut J Bjuland wrote:
I have added a subject to the to the groups of subject that was
available for the qdec tutorials. with this in mind I have used
make_average_subject and I have now 41 subject. But when I run this
command there is always a subject for which it can not find brain. I am
positive that the necessary files are available. The subject that I have
add is anonymous mri picture that i have imported into freesurf, and the
subject is 20 years old female.
Knut J
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The information in this e-mail is intended only for the person to whom it is
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total 176
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 004
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 008
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 017
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 021
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 032
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 039
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 040
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 045
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 049
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 067
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 073
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 074
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 080
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 084
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 091
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 092
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 093
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 095
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 097
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 099
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 102
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 103
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 106
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drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 111
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 114
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 123
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 124
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 128
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 129
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 130
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 131
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 133
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 136
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 138
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 141
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 144
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 145
drwx------. 8 knutjbj knutjbj 4096 Aug 15 2010 149
drwxrwxr-x. 12 knutjbj knutjbj 4096 Mar 30 18:57 150
drwxrwxr-x. 8 knutjbj knutjbj 4096 Mar 31 13:56 fsaverage
drwx------. 5 knutjbj knutjbj 4096 Mar 31 11:24 glm
-rw-rw-r--. 1 knutjbj knutjbj 0 Mar 31 15:28 permission.txt
drwx------. 2 knutjbj knutjbj 4096 Aug 15 2010 qdec
drwx------. 2 knutjbj knutjbj 4096 Aug 15 2010 scripts
GroupDescriptorFile 1
Title lh.gender_age.glmdir
MeasurementName thickness
Class genderFemale
Class genderMale
Variables age
Input 049 genderMale 19.000000
Input 141 genderFemale 20.000000
Input 084 genderMale 21.000000
Input 021 genderMale 22.000000
Input 093 genderFemale 22.000000
Input 080 genderMale 23.000000
Input 091 genderFemale 23.000000
Input 040 genderFemale 24.000000
Input 017 genderMale 25.000000
Input 138 genderFemale 26.000000
Input 106 genderMale 27.000000
Input 108 genderMale 28.000000
Input 092 genderMale 29.000000
Input 124 genderFemale 30.000000
Input 129 genderFemale 65.000000
Input 103 genderFemale 66.000000
Input 130 genderMale 68.000000
Input 039 genderFemale 69.000000
Input 123 genderFemale 69.000000
Input 095 genderFemale 70.000000
Input 067 genderMale 71.000000
Input 004 genderMale 72.000000
Input 133 genderFemale 73.000000
Input 097 genderMale 74.000000
Input 073 genderMale 77.000000
Input 149 genderMale 77.000000
Input 045 genderFemale 78.000000
Input 136 genderFemale 78.000000
Input 144 genderMale 78.000000
Input 032 genderMale 79.000000
Input 131 genderFemale 80.000000
Input 145 genderMale 80.000000
Input 111 genderFemale 81.000000
Input 102 genderFemale 82.000000
Input 074 genderMale 85.000000
Input 114 genderFemale 87.000000
Input 008 genderFemale 88.000000
Input 128 genderMale 90.000000
Input 099 genderFemale 93.000000
Input 150 genderFemale 39.000000
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Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
