That is probably the case that 004 does not have all its files. Some of the files have been removed to make the distribution smaller. There may only be enough data to run the tutorial. doug
Knut J Bjuland wrote: > i used the following command to repeat a failure output. i used just one > subject to get a fast output since my pc is just a core i5 box. > make_average_subject --subjects 004 --out test > INFO: extension is mgz > ERROR: cannot find brain for 004 > ERROR: make_average_volume > > It appears that the tutorials files are missing some files. which cause > my troubles lack the origs below the mri folder. > > Knut J > > > On 03/31/2011 03:40 PM, Bruce Fischl wrote: > >> and what is the error? >> On Thu, 31 Mar 2011, Knut J Bjuland wrote: >> >> >>> Hi >>> >>> I used the followinf commando line optin for make_average_subjects >>> --fsgd gender_age.fsgd --out fsaverage. I have now used chmod -R +w * >>> to add write permission to the dir below. As a matter of fate I ran >>> make_average_subject --subjects 004 --out test and got the same error >>> as before. >>> >>> Knut J >>> >>> >>> On 03/31/2011 03:16 PM, Bruce Fischl wrote: >>> >>>> can you run ls -l to check that that file exists and you have >>>> permission >>>> to it? Also, we need the command line you ran and the error you got in >>>> order to help you. >>>> >>>> cheers >>>> Bruce >>>> On Thu, 31 Mar 2011, Knut J Bjuland wrote: >>>> >>>> >>>>> I have added a subject to the to the groups of subject that was >>>>> available for the qdec tutorials. with this in mind I have used >>>>> make_average_subject and I have now 41 subject. But when I run this >>>>> command there is always a subject for which it can not find brain. >>>>> I am >>>>> positive that the necessary files are available. The subject that I >>>>> have >>>>> add is anonymous mri picture that i have imported into freesurf, >>>>> and the >>>>> subject is 20 years old female. >>>>> >>>>> Knut J >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>> you in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >>>> >>>> >>>> >>>> >>> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
