Hi Knut does the file brain.mgz exist in $SUBJECTS_DIR/004/mri? If so, can you run
ls -l $SUBJECTS_DIR/004/mri/brain.mgz Bruce On Thu, 31 Mar 2011, Knut J Bjuland wrote: > i used the following command to repeat a failure output. i used just one > subject to get a fast output since my pc is just a core i5 box. > make_average_subject --subjects 004 --out test > INFO: extension is mgz > ERROR: cannot find brain for 004 > ERROR: make_average_volume > > It appears that the tutorials files are missing some files. which cause my > troubles lack the origs below the mri folder. > > Knut J > > > On 03/31/2011 03:40 PM, Bruce Fischl wrote: >> and what is the error? >> On Thu, 31 Mar 2011, Knut J Bjuland wrote: >> >>> Hi >>> >>> I used the followinf commando line optin for make_average_subjects --fsgd >>> gender_age.fsgd --out fsaverage. I have now used chmod -R +w * to add >>> write permission to the dir below. As a matter of fate I ran >>> make_average_subject --subjects 004 --out test and got the same error as >>> before. >>> >>> Knut J >>> >>> >>> On 03/31/2011 03:16 PM, Bruce Fischl wrote: >>>> can you run ls -l to check that that file exists and you have permission >>>> to it? Also, we need the command line you ran and the error you got in >>>> order to help you. >>>> >>>> cheers >>>> Bruce >>>> On Thu, 31 Mar 2011, Knut J Bjuland wrote: >>>> >>>>> I have added a subject to the to the groups of subject that was >>>>> available for the qdec tutorials. with this in mind I have used >>>>> make_average_subject and I have now 41 subject. But when I run this >>>>> command there is always a subject for which it can not find brain. I am >>>>> positive that the necessary files are available. The subject that I have >>>>> add is anonymous mri picture that i have imported into freesurf, and the >>>>> subject is 20 years old female. >>>>> >>>>> Knut J >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>> error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>>> >>>> >>>> >>> >>> >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
