Hi Anastasia, Thanks for your answer. Unfortunately I overwrote the executables (I could still retrieve them from the website distribution ?). Interestingly this message does not show up when selecting only a subset of the pathways, as for example ( lh.ccg rh.ccg lh.unc rh.unc ), however the merged_avg33_mni file only appears to contain the first pathway (lh.ccg).
David Am 23.08.2011 um 17:06 schrieb Anastasia Yendiki: > > Hi David - Glad to hear things are working! I can look into > dmri_mergepaths and see if something is wrong with the snow leopard build. > Have you by any chance kept the original leopard build of it? If you > haven't overwritten it, it'd be useful to run the same thing with that > version and see if it works. Thanks! > > a.y > > On Tue, 23 Aug 2011, David Coynel wrote: > >> Dear Anastasia, >> >> Thanks a lot for the upload. The procedure now runs perfectly, except for >> that last message at the end of trac-all -path : >> >> >> Merging volume 18 of 18... >> Threshold: 68.1 Name: Right Uncinate Fasciculus >> dmri_mergepaths(26008) malloc: *** mmap(size=18446744073709543424) failed >> (error code=12) >> *** error: can't allocate region >> *** set a breakpoint in malloc_error_break to debug >> Done in 2.433 sec. >> dmri_mergepaths done >> #------------------------------------- >> trac-paths finished without error at Do 18 Aug 2011 11:39:42 CEST >> >> >> This however does not seem to affect the pipeline, as all the expected >> outputs seem to be present and valid. >> >> Dr. David Coynel >> Division of Cognitive Neuroscience >> >> University of Basel >> Birmannsgasse 8 >> 4055 Basel - Switzerland >> >> david.coy...@unibas.ch >> tel: +41(0)612.670.240 >> >> Am 17.08.2011 um 23:44 schrieb Anastasia Yendiki: >> >>> >>> Hi all - By popular demand we've posted the dmri_* executables compiled on >>> snow leopard here: >>> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos-snow-leopard-intel/dmri_5.1_snow_leopard.tar.gz >>> >>> This is not the entire FS distribution, just the commands that are called >>> by trac-all. If you are a mac user with snow leopard and have been running >>> into memory issues with the leopard version, you can download this, copy >>> the new files into your $FREESURFER_HOME/bin, and try rerunning the part >>> of the analysis that had errored out. >>> >>> Let us know if there are any problems, >>> a.y >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
