If you know Python, you can likely do this pretty easily with tools from the PySurfer package: http://pysurfer.github.com/
(Check out surfer.io.read_annotation). If you're just using the io routines, you won't need the somewhat heavy Mayavi visualization dependencies. You should be able to read in and manipulate surfaces/annotations just with numpy. Best, Michael 2011/10/8 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > it wouldn't be that hard to put something together if you want to avoid > matlab. Spec out what you need and send me a sample, maybe on Bert > > Bruce > > On Sat, 8 Oct 2011, Pedro Paulo de Magalhães Oliveira Junior wrote: > > Thanks. >> >> I suppose I can't do this without matlab. Right? >> >> -- iOS 5.0 >> >> Em 08/10/2011, às 19:29, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> escreveu: >> >> there is a write_annotation.m file you can use >>> On Sat, 8 Oct 2011, Anderson Winkler wrote: >>> >>> ops, it seems the comments inside the dpxwrite.m no longer reflect what >>>> it does. You probably don't need this, but anyway, the version attached is >>>> more up-to-date. >>>> Anderson >>>> On 08/10/11 17:28, Anderson Winkler wrote: >>>> Hi Pedro, >>>> >>>> There is probably a way to do that using FS tools from the command >>>> line, but the attached script should do the same. The result is a >>>> "data-per-vertex" file, which >>>> is the same as the .asc files from mris_convert. There is no >>>> geometry input, hence the vertex coordinates are all set to (0,0,0). >>>> >>>> Hope it helps! >>>> >>>> All the best, >>>> >>>> Anderson >>>> >>>> On 08/10/11 17:17, Pedro Paulo de Magalh�es Oliveira Junior wrote: >>>> I need to create a file where I have the parcellation value >>>> (structure name) per vertex. >>>> I've tried�mris_convert --annot /Applications/freesurfer/** >>>> subjects/bert/label/lh.aparc.**annot >>>> /Applications/freesurfer/**subjects/bert/surf/lh.pial >>>> parc.asc >>>> But I get the error:�ERROR: unknown file annot file type specified for >>>> output: saida.asc >>>> Has someone done this before? >>>> Thanks >>>> ------------------------------**------------------------------** >>>> --------- >>>> Pedro Paulo de Magalh�es Oliveira Junior >>>> Netfilter & SpeedComm Telecom -- www.netfilter.com.br >>>> -- For mobile:�http://itunes.apple.**com/br/artist/netfilter/** >>>> id365306441 <http://itunes.apple.com/br/artist/netfilter/id365306441> >>>> ______________________________**_________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> The information in this e-mail is intended only for the person to whom >>>> it is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >>>> If the e-mail was sent to you in error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>>> ______________________________**_________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> The information in this e-mail is intended only for the person to whom >>>> it is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >>>> If the e-mail was sent to you in error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>>> >>> ______________________________**_________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to whom it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >>> If the e-mail was sent to you in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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