Thanks.
It works as I wished.
from surfer import io as sIo
a = sIo.read_annot('label/lh.aparc.annot')
b = sIo.read_geometry('surf/lh.pial')
And now I can have each vertex labeled
---------------------------------------------------------------------
Pedro Paulo de Magalhães Oliveira Junior
Netfilter & SpeedComm Telecom
-- www.netfilter.com.br
-- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441
2011/10/9 Michael Waskom <mwas...@stanford.edu>
> If you know Python, you can likely do this pretty easily with tools from
> the PySurfer package: http://pysurfer.github.com/
>
> (Check out surfer.io.read_annotation).
>
> If you're just using the io routines, you won't need the somewhat heavy
> Mayavi visualization dependencies. You should be able to read in and
> manipulate surfaces/annotations just with numpy.
>
> Best,
> Michael
>
>
> 2011/10/8 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
>
>> it wouldn't be that hard to put something together if you want to avoid
>> matlab. Spec out what you need and send me a sample, maybe on Bert
>>
>> Bruce
>>
>> On Sat, 8 Oct 2011, Pedro Paulo de Magalhães Oliveira Junior wrote:
>>
>> Thanks.
>>>
>>> I suppose I can't do this without matlab. Right?
>>>
>>> -- iOS 5.0
>>>
>>> Em 08/10/2011, às 19:29, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
>>> escreveu:
>>>
>>> there is a write_annotation.m file you can use
>>>> On Sat, 8 Oct 2011, Anderson Winkler wrote:
>>>>
>>>> ops, it seems the comments inside the dpxwrite.m no longer reflect what
>>>>> it does. You probably don't need this, but anyway, the version attached is
>>>>> more up-to-date.
>>>>> Anderson
>>>>> On 08/10/11 17:28, Anderson Winkler wrote:
>>>>> Hi Pedro,
>>>>>
>>>>> There is probably a way to do that using FS tools from the command
>>>>> line, but the attached script should do the same. The result is a
>>>>> "data-per-vertex" file, which
>>>>> is the same as the .asc files from mris_convert. There is no
>>>>> geometry input, hence the vertex coordinates are all set to (0,0,0).
>>>>>
>>>>> Hope it helps!
>>>>>
>>>>> All the best,
>>>>>
>>>>> Anderson
>>>>>
>>>>> On 08/10/11 17:17, Pedro Paulo de Magalh�es Oliveira Junior
>>>>> wrote:
>>>>> I need to create a file where I have the parcellation value
>>>>> (structure name) per vertex.
>>>>> I've tried�mris_convert --annot /Applications/freesurfer/**
>>>>> subjects/bert/label/lh.aparc.**annot
>>>>> /Applications/freesurfer/**subjects/bert/surf/lh.pial
>>>>> parc.asc
>>>>> But I get the error:�ERROR: unknown file annot file type specified
>>>>> for output: saida.asc
>>>>> Has someone done this before?
>>>>> Thanks
>>>>> ------------------------------**------------------------------**
>>>>> ---------
>>>>> Pedro Paulo de Magalh�es Oliveira Junior
>>>>> Netfilter & SpeedComm Telecom -- www.netfilter.com.br
>>>>> -- For mobile:�http://itunes.apple.**com/br/artist/netfilter/**
>>>>> id365306441 <http://itunes.apple.com/br/artist/netfilter/id365306441>
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