Thanks, i am also still able to display the rh in tksurfer without issue, shouldnt that also fail with the current rh.cortex.label?
michael On Fri, Jun 1, 2012 at 11:57 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > I would have expected that to fail. You can check the time stamps to see > if your output is newer or older than rh.cortex.label. If older, it is > probably ok. > > On 06/01/2012 12:53 PM, mdkrue...@uwalumni.com wrote: > > Actually one last question- > > > > I used label2label to transfer some labels and grab ROI thickness > > averages from the labels on the subject with the rh.cortex.label that > > has been overwritten. I received no errors during this, does this mean > > that the label transfers and averages are valid, or do i need to redo > > them? > > > > Best- > > Michael > > > > > > > > On Fri, Jun 1, 2012 at 11:05 AM, mdkrue...@uwalumni.com > > <mailto:mdkrue...@uwalumni.com> <mdkrue...@uwalumni.com > > <mailto:mdkrue...@uwalumni.com>> wrote: > > > > Doug - > > > > That does indeed seem to be the problem! Ill just rerun some > > things here to rectify that. Thanks for all the help everyone! > > > > Best- > > Michael > > > > On Fri, Jun 1, 2012 at 11:01 AM, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> > > wrote: > > > > I think the label file got overwritten at some point. > > Check the time > > stamp and see if it is much different than the other rh files > > > > On 06/01/2012 11:55 AM, mdkrue...@uwalumni.com > > <mailto:mdkrue...@uwalumni.com> wrote: > > > Bruce- > > > > > > It is, and i agree, for instance here is the > > lh.cortex.label file > > > > > > #label , from subject ?? > > > 149955 > > > 22 -10.374 55.016 3.203 0.0000000000 > > > 112 -6.294 36.386 -7.809 0.0000000000 > > > 114 -6.137 38.556 13.808 0.0000000000 > > > 247 -11.304 45.214 -2.709 0.0000000000 > > > 248 -6.278 39.973 2.192 0.0000000000 > > > 249 -10.766 45.545 6.476 0.0000000000 > > > 507 -11.087 42.990 18.865 0.0000000000 > > > > > > On 6/1/12, Bruce Fischl<fis...@nmr.mgh.harvard.edu > > <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > >> that is the rh.cortex.label file? It doesn't look like > > it.... > > >> > > >> On Fri, 1 Jun 2012, mdkrue...@uwalumni.com > > <mailto:mdkrue...@uwalumni.com> > > >> wrote: > > >> > > >>> Bruce- > > >>> > > >>> Here you go. Subjects recoded. > > >>> > > >>> Graph: name > > >>> > > >>> Data: path > > >>> Variable: Subject > > >>> Measurement: external > > >>> subject id, class id, variable value, measurement > > value, standard > > >>> deviation > > >>> ------------ > > >>> S1 Cl1 0.0 3.10522500831 0.268702566292 > > >>> S2 Cl1 1.0 2.67585065105 0.396833961125 > > >>> S3 Cl1 2.0 3.07631433273 0.173949345568 > > >>> S4 Cl1 3.0 2.85668014067 0.0907729539181 > > >>> S5 Cl1 4.0 3.24184323479 0.212597547853 > > >>> S6 Cl1 5.0 2.54176559894 0.111183384791 > > >>> S7 Cl1 6.0 2.87165045086 0.137271513295 > > >>> S8 Cl1 7.0 2.72165358457 0.128648203321 > > >>> > > >>> On 6/1/12, Bruce Fischl<fis...@nmr.mgh.harvard.edu > > <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > >>>> something like this: > > >>>> > > >>>> head ~/local_subjects/bruce/label/rh.cortex.label > > >>>> #!ascii label , from subject vox2ras=TkReg > > >>>> 141813 > > >>>> 0 11.129 -93.761 -16.820 0.0000000000 > > >>>> 1 11.136 -93.912 -16.623 0.0000000000 > > >>>> 2 10.755 -93.913 -16.573 0.0000000000 > > >>>> 3 11.696 -93.374 -17.237 0.0000000000 > > >>>> 4 11.022 -93.203 -16.969 0.0000000000 > > >>>> 5 11.020 -93.855 -17.042 0.0000000000 > > >>>> 6 10.248 -93.745 -16.712 0.0000000000 > > >>>> 7 11.591 -93.603 -17.551 0.0000000000 > > >>>> > > >>>> > > >>>> > > >>>> and please cc the list so others can answer! > > >>>> On Fri, 1 Jun 2012, > > >>>> mdkrue...@uwalumni.com > > <mailto:mdkrue...@uwalumni.com> wrote: > > >>>> > > >>>>> Bruce- > > >>>>> The partition does not appear to be full, although > > we have been having > > >>>>> issues with migrating data so > > >>>>> that could be a source of the issue. The > > rh.cortex.label does exist and > > >>>>> is > > >>>>> located within the subject's > > >>>>> label dir. As for the first couple of lines, I am > > unsure what you are > > >>>>> asking for. > > >>>>> > > >>>>> Thanks for the quick response! > > >>>>> > > >>>>> Best- > > >>>>> Michael > > >>>>> > > >>>>> On Fri, Jun 1, 2012 at 10:26 AM, Bruce Fischl > > >>>>> <fis...@nmr.mgh.harvard.edu > > <mailto:fis...@nmr.mgh.harvard.edu>> > > >>>>> wrote: > > >>>>> Hi Michael > > >>>>> > > >>>>> can you check to see that your partition is > > not full? Does the > > >>>>> rh.cortex.label file exist > > >>>>> in that subject's label dir? If so, what are > > the first couple of > > >>>>> lines? > > >>>>> > > >>>>> cheers > > >>>>> Bruce > > >>>>> > > >>>>> On Fri, 1 Jun 2012, mdkrue...@uwalumni.com > > <mailto:mdkrue...@uwalumni.com> wrote: > > >>>>> > > >>>>> To anyone who can help - > > >>>>> I am trying to tun a GLM on a set of > > data and am currently > > >>>>> receiving an error > > >>>>> during the mri_surf2surf > > >>>>> portion. When running this portion i > > receive an error ( > > >>>>> could > > >>>>> not scan # of > > >>>>> lines from (path to > > >>>>> rh.cortex.label)). This does not happen > > when running this > > >>>>> portion for the lh, > > >>>>> only the right. I am > > >>>>> unable to find any information on this > > error on the mailing > > >>>>> list so im hoping > > >>>>> someone can help! > > >>>>> > > >>>>> Best- > > >>>>> Michael Kruepke > > >>>>> > > >>>>> -- > > >>>>> Michael D. Kruepke > > >>>>> PhD - University of Illinois at > > Urbana-Champaign > > >>>>> BA - Psych - University of > > Wisconsin-Madison > > >>>>> mdkrue...@gmail.com <mailto:mdkrue...@gmail.com> > > >>>>> (262)-483-7449 <tel:%28262%29-483-7449> > > >>>>> > > >>>>> > > >>>>> > > >>>>> > > >>>>> > > >>>>> The information in this e-mail is intended only for > > the person to whom > > >>>>> it > > >>>>> is > > >>>>> addressed. If you believe this e-mail was sent to > > you in error and the > > >>>>> e-mail > > >>>>> contains patient information, please contact the > > Partners Compliance > > >>>>> HelpLine at > > >>>>> http://www.partners.org/complianceline . If the > > e-mail was sent to you > > >>>>> in > > >>>>> error > > >>>>> but does not contain patient information, please > > contact the sender and > > >>>>> properly > > >>>>> dispose of the e-mail. > > >>>>> > > >>>>> > > >>>>> > > >>>>> > > >>>>> -- > > >>>>> Michael D. Kruepke > > >>>>> PhD - University of Illinois at Urbana-Champaign > > >>>>> BA - Psych - University of Wisconsin-Madison > > >>>>> mdkrue...@gmail.com <mailto:mdkrue...@gmail.com> > > >>>>> (262)-483-7449 <tel:%28262%29-483-7449> > > >>>>> > > >>>>> > > >>>>> > > >>> > > >>> > > > > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 <tel:617-724-2358> > > Fax: 617-726-7422 <tel:617-726-7422> > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > -- > > Michael D. Kruepke > > PhD - University of Illinois at Urbana-Champaign > > BA - Psych - University of Wisconsin-Madison > > mdkrue...@gmail.com <mailto:mdkrue...@gmail.com> > > (262)-483-7449 <tel:%28262%29-483-7449> > > > > > > > > > > -- > > Michael D. Kruepke > > PhD - University of Illinois at Urbana-Champaign > > BA - Psych - University of Wisconsin-Madison > > mdkrue...@gmail.com <mailto:mdkrue...@gmail.com> > > (262)-483-7449 <tel:%28262%29-483-7449> > > > > > > > > > > -- > > Michael D. Kruepke > > PhD - University of Illinois at Urbana-Champaign > > BA - Psych - University of Wisconsin-Madison > > mdkrue...@gmail.com <mailto:mdkrue...@gmail.com> > > (262)-483-7449 > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- Michael D. Kruepke PhD - University of Illinois at Urbana-Champaign BA - Psych - University of Wisconsin-Madison mdkrue...@gmail.com (262)-483-7449
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