Thanks! I can visualize the 3D renders of interest with different colors, but from "freeview -h" I couldn't get the following: is it possible to automatize the "File > Save movie frames" option?
Thanks again! Gari On Fri, May 31, 2013 at 4:59 PM, Juan Eugenio Iglesias < igles...@nmr.mgh.harvard.edu> wrote: > Ender asked me to forward you this: > > I had to automate freeview recently. > Freeview can be used via command line. > For options please write > freeview -h > in the console / terminal. > > An example command that produces a surface and overlays a map on it: > freeview -f lh.inflated:overlay=L.mgz -cam azimuth 180 > > Let me know if this helps. > > Cheers, > > E > > > > > On Fri, 2013-05-31 at 08:35 -0400, Ruopeng Wang wrote: > > There is a screenshot option -ss from the command-line. Run 'freeview > -h' will show you all the available options. > > > > Ruopeng > > > > On May 31, 2013, at 6:16 AM, Garikoitz Lerma-Usabiaga < > gariko...@gmail.com> wrote: > > > > > Hi list, > > > is it possible to automate Freeview automation from the command line? > > > > > > I want to automatically render 3D images of the hippocampus (I have a > separate volume, based on hippo-subfields) and have an image for all > subjects for quality checking. > > > > > > thanks! > > > Gari > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > -- > Juan Eugenio Iglesias, PhD > http://www.jeiglesias.com > igles...@nmr.mgh.harvard.edu > Athinoula A. Martinos Center for Biomedical Imaging > 149 Thirteenth Street, Suite 2301 > Charlestown, Massachusetts 2129 > U.S.A. > > > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
