mri_normalize is a binary so you can't, just recon-all.
On Fri, 31 May 2013, Caspar M. Schwiedrzik wrote:
I only find flags for mri_normalize and mri_segment in recon-all, and I have
trouble reading the contents mri_normalize with a regular text editor.
caspar
2013/5/31 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Hi Caspar
it changes some parameters to the intensity normalization and
segmentation to account for the lower SNR and increased CNR in
the mprage. You'll need to look in the recon-all script for the
details
cheers
Bruce
On Thu, 30 May 2013, Caspar M. Schwiedrzik wrote:
Hi!
Is there more documentation on what settings the
mprage flag enables in
recon-all?
Specifically, I would be interested which individual
steps it affects and
what the parameters are for each of the steps.
Thanks!
Caspar
The information in this e-mail is intended only for the person to whom
it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you
in error
but does not contain patient information, please contact the sender
and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
