Hello FSexperts, I used the mgh memprage and the dura correction scheme described in:
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28479.html . Afterwards I applied recon-all -autorecon-pial -subjid subj_name to the subjects in order to include the changes in the subsequent FS-Fast analysis. Currently I do not see any effect in tksurfer if I proceed like this. Please correct me if I am wrong with my effect size expectation. For completeness I add the command pipeline used: recon-all -s subj_name -i /.../dicom_images.dcm recon-all -s subj_name -use-gpu -mprage -all mri_convert -odt float ./... .dcm $SUBJECTS_DIR/subj_name/mri/001.mgz mris_make_surfaces -dura 001.mgz 4 subj_name lh mris_make_surfaces -dura 001.mgz 4 subj_name rh recon-all -autorecon-pial -subjid subj_name _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
