what is your command line?
On 08/07/2013 10:19 AM, Heather L. Urry wrote: > Hi folks, > > When issuing a recon-all command, I'm seeing the following message: > > set: Variable name must contain alphanumeric characters > > recon-all stalls and doesn't move forward (doesn't even create the > subject directory). > > I'm using Freesurfer 5.3.0 > (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0) on Ubuntu 12.04.2. > In fact, we just upgraded to this version of Ubuntu from an older > version of Mandriva and to this latest version of Freesurfer. > recon-all did not produce this message before these two upgrades. Any > help you can offer would be most appreciated! Thanks in advance. > > Best, > > Heather > > -- > Heather L. Urry, Ph.D. > Department of Psychology > Tufts University > 490 Boston Avenue > Medford, MA 02155 > > email: heather.u...@tufts.edu <mailto:heather.u...@tufts.edu> > phone: 617-627-3733 > fax: 617-627-3181 > > http://ase.tufts.edu/psychology/ebbl > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
