Here it is: recon-all -i /home/hurry01/r/resdep_mri_data/resdep014/265000-10-1.dcm -s resdep214 -all &
(sorry for not thinking to include it originally) Heather On Wed, Aug 7, 2013 at 11:48 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > what is your command line? > > > > > On 08/07/2013 10:19 AM, Heather L. Urry wrote: > > Hi folks, > > > > When issuing a recon-all command, I'm seeing the following message: > > > > set: Variable name must contain alphanumeric characters > > > > recon-all stalls and doesn't move forward (doesn't even create the > > subject directory). > > > > I'm using Freesurfer 5.3.0 > > (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0) on Ubuntu 12.04.2. > > In fact, we just upgraded to this version of Ubuntu from an older > > version of Mandriva and to this latest version of Freesurfer. > > recon-all did not produce this message before these two upgrades. Any > > help you can offer would be most appreciated! Thanks in advance. > > > > Best, > > > > Heather > > > > -- > > Heather L. Urry, Ph.D. > > Department of Psychology > > Tufts University > > 490 Boston Avenue > > Medford, MA 02155 > > > > email: heather.u...@tufts.edu <mailto:heather.u...@tufts.edu> > > phone: 617-627-3733 > > fax: 617-627-3181 > > > > http://ase.tufts.edu/psychology/ebbl > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Heather L. Urry, Ph.D. Department of Psychology Tufts University 490 Boston Avenue Medford, MA 02155 email: heather.u...@tufts.edu phone: 617-627-3733 fax: 617-627-3181 http://ase.tufts.edu/psychology/ebbl
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
