I think there is - look in the view menu. There is also something in freeview that Ruopeng can point you at.
cheers Bruce On Sun, 27 Apr 2014, prasser wrote: > Thanks for your reply. > > Yes, I can upload the data. Is there a private area I can upload to? > > Also, is there a flag that enables acquisition slice space info to be used > with tkmedit? > > Lastly, when converting to .nii with other packages and viewing with tkmedit > the acquisition slice space seems to be taken into account. > > Paul > > > > > > ---- On Sun, 27 Apr 2014 17:33:02 -0700 Bruce Fischl > <fis...@nmr.mgh.harvard.edu> wrote ---- > > Hi Paul > > perhaps Ruopeng can comment, but I suspect this isn't a problem > - it's > just showing it to you in a standard anatomical space not the > slice spaceit > was acquired in. If you want to upload the dataset we can take a > look and > confirm > > cheers > Bruce > > > On Sun, 27 Apr 2014, prasser wrote: > > > Hi, > > > > I am still having some concerns using mri_convert on Skyra > volumes that I'm > > hoping can please be addressed. > > > > On this occasion I have used mri_convert to convert a single > dicom file to > > nifti from a volume collected on a siemens Skyra scanner using > Freesurfer5.3 > > on CentOS5.7. > > > > When viewing this nifti image using tkmedit it appears > 'cut-up' over many > > sagittal slices (please see attached) rather than the whole > image appearing > > on one plane. > > > > Not sure if this is an issue with tkmedit or mri_convert? > > > > This problem persists if i convert the entire volume, with > this 'cutting' > > appearing as vertical lines in the image. > > > > This is also the case when using the new mri_convert patch for > OS X. > > > > Lastly, I can upload a dicom file if needed. > > > > Thanks, > > Paul > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person > to whom it is > addressed. If you believe this e-mail was sent to you in error > and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent > to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
