Hi Martin, Thanks for your response. When I run the command alone, the following message appears:
mri_convert --frame 0 ./tmp-0001_base_lh_thickness_U5R6w6/glm/beta.mgh ./tmp-0001_base_lh_thickness_U5R6w6/beta0.mgh bash: /Applications/freesurfer//bin/mri_convert: cannot execute binary file I've made these files executable (chmod +x <filename>) but that does not appear to make a difference. I'm currently operating on a 64 bit Mac osX 10.7.5. I downloaded the bug fix from https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes. Is there another version located elsewhere that has a solution that is more appropriate to my operating system? Thanks for your help, Katherine Reiter, M.S. Clinical Psychology Doctoral Student Marquette University Phone: (414) 288-3807 Email: katherine.rei...@marquette.edu On Mon, May 19, 2014 at 3:33 PM, Martin Reuter <mreu...@nmr.mgh.harvard.edu>wrote: > Hi Katherine, > > are you sure you downloaded the right executable for your operating > system? It seems to be not able to run the command (exec format error). Did > you replace mri_convert? > what happens if you run the command yourself: > > mri_convert --frame 0 ./tmp-0001_base_lh_thickness_3f8Byr/glm/beta.mgh > ./tmp-0001_base_lh_thickness_3f8Byr/beta0.mgh > > Best, Martin > > On 05/16/2014 04:45 PM, Katherine Reiter wrote: > > Hi Freesurfer experts, > > I'm working on analyzing longitudinal data using the longitudinal > 2-stage model. When running the data through long_mris_slopes, I was > getting the following error message: ERROR 1 : mris_calc compute sym. pct. > change (spc) problem? > > I saw in previous messages that this is the result of a bug. I found the > fix under the release notes, though after downloading it and placing the > fix in the bin and makign these files executable, I keep receiving the > following error messages. Does anyone have any insight into the problem and > possible solutions? > > mri_convert --frame 0 ./tmp-0001_base_lh_thickness_3f8Byr/glm/beta.mgh > ./tmp-0001_base_lh_thickness_3f8Byr/beta0.mgh > > Traceback (most recent call last): > File "/Applications/freesurfer//bin/long_mris_slopes", line 744, in > <module> > run_cmd(cmd,'mri_convert split frames 0 did not work?') > File "/Applications/freesurfer//bin/long_mris_slopes", line 422, in > run_cmd > retcode = subprocess.call(args) > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", > line 486, in call > return Popen(*popenargs, **kwargs).wait() > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", > line 672, in __init__ > errread, errwrite) > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", > line 1202, in _execute_child > raise child_exception > OSError: [Errno 8] Exec format error > > Thank you, > > Katherine Reiter, M.S. > > Clinical Psychology Doctoral Student > > Marquette University > Phone: (414) 288-3807 > Email: katherine.rei...@marquette.edu > > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Martin Reuter, Ph.D. > > Instructor in Neurology > Harvard Medical School > Assistant in Neuroscience > Dept. of Radiology, Massachusetts General Hospital > Dept. of Neurology, Massachusetts General Hospital > Research Affiliate > Computer Science and Artificial Intelligence Lab, > Dept. of Electrical Engineering and Computer Science, > Massachusetts Institute of Technology > > A.A.Martinos Center for Biomedical Imaging > 149 Thirteenth Street, Suite 2301 > Charlestown, MA 02129 > > Phone: +1-617-724-5652 > Email: > mreu...@nmr.mgh.harvard.edu > reu...@mit.edu > Web : http://reuter.mit.edu > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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