The problem is probabably that the fsl flirt registration failed and that caused bbr to fail. If you have spm and matlab installed, running it with
cd /misc/data41/yuex/humanfMRI/human_curvature/subjdata/field090514 bbregister --s field --init-spm --6 --bold --mov bold/template.nii --reg bold/register.dof6.dat --init-reg-out bold/init.register.dof6.dat On 10/16/2014 11:14 AM, Xiaomin Yue wrote: > Hi, > > When I used preproc-sess processing my data, the registration output > is off a great of deal. The functional data was collected using 7T, > and the surface was reconstructed successfully from 3T data and was > checked visually multiple times. I am using fs5.3 installed on a > linux system. Attached is the registration log file. > > Any suggestions will be appreciated. > > Xiaomin Yue > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
