Hi Doug, Thanks for the promptly response. I do have spm8 and spm12b installed. Which version should I use? Also, how to change the spm as the inital registration method in the preproc-sess? Xiaomin
> Date: Thu, 16 Oct 2014 12:00:04 -0400 > From: gr...@nmr.mgh.harvard.edu > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] volume to surface registration problem > > > The problem is probabably that the fsl flirt registration failed and > that caused bbr to fail. If you have spm and matlab installed, running > it with > > cd /misc/data41/yuex/humanfMRI/human_curvature/subjdata/field090514 > bbregister --s field --init-spm --6 --bold --mov bold/template.nii --reg > bold/register.dof6.dat --init-reg-out bold/init.register.dof6.dat > > > > > On 10/16/2014 11:14 AM, Xiaomin Yue wrote: > > Hi, > > > > When I used preproc-sess processing my data, the registration output > > is off a great of deal. The functional data was collected using 7T, > > and the surface was reconstructed successfully from 3T data and was > > checked visually multiple times. I am using fs5.3 installed on a > > linux system. Attached is the registration log file. > > > > Any suggestions will be appreciated. > > > > Xiaomin Yue > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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