Yes, I think I fixed it. On Mar 2, 2015, at 11:21 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote:
> > I know that Ruopeng was fixing it a few months ago. Ruopeng, did you finish > that fix? > doug > > On 03/02/2015 10:28 AM, Xiaomin Yue wrote: >> Hi Doug, >> >> thanks for your response. You are right that the freeview in v5.3 doesn't >> generate the registration file correctly. However, the newest development >> version of freeview can generate a lta registration file correctly with >> correct source and target volume. then, a registration file in reg format >> can be generated using lta_convert included in the development version of >> freesurfer. It is much easier and precise to manually adjust the >> registration using freeview than tkregister. It might be useful to include >> a tool using freeview to manually adjust registration in the next freesurfer >> release. >> >> Xiaomin >> >> ------------------------------------------------------------------------ >> Date: Sun, 1 Mar 2015 13:57:52 -0500 >> From: gr...@nmr.mgh.harvard.edu >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] freeview registration >> >> >> I think that freeview does not correctly generate the registration file. You >> can use it to check the regsitration, but us tkregister if you need to edit >> it. >> doug >> >> >> On 2/27/15 10:18 AM, Xiaomin Yue wrote: >> >> Hi All, >> >> After using freeview to manually adjust the registration between a >> functional and T1.mgz generated by bbregister, I saved the >> registration file in freeview as lta format, which seems the only >> option. However, the registration file has same file name for >> source and target volume. So, when loading it again to freeview, >> the registration is totally wrong. In order to avoid the >> problem, I converted the register.dof6.dat to lta formation, where >> the lta file has correct source and target volume name. Then, I >> loaded the lta file generated from register.dof6.dat, did manual >> adjustment, and then saved adjusted registration as a lta file. >> the final lta file has same problem. I am using freesurfer 5.3. >> Any suggestion is appreciated. >> >> Thanks, >> Xiaomin >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> _______________________________________________ Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information >> in this e-mail is intended only for the person to whom it is addressed. If >> you believe this e-mail was sent to you in error and the e-mail contains >> patient information, please contact the Partners Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error but does not contain patient information, please contact the sender >> and properly dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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