THX for your response. I have never move fs files. but i had a MATLAB 2011b, because of the virtual machine`s 32 bit.
May this do harm? Or I don't configure the mat lab rightly? here is the startup.m in ~/fsuser %------------ FreeSurfer -----------------------------% fshome = getenv('FREESURFER_HOME'); fsmatlab = sprintf('%s/matlab',fshome); if (exist(fsmatlab) == 7) path(path,fsmatlab); end clear fshome fsmatlab; %-----------------------------------------------------% %------------ FreeSurfer FAST ------------------------% fsfasthome = getenv('FSFAST_HOME'); fsfasttoolbox = sprintf('%s/toolbox',fsfasthome); if (exist(fsfasttoolbox) == 7) path(path,fsfasttoolbox); end clear fsfasthome fsfasttoolbox; %-----------------------------------------------------% From: noahb.markow...@gmail.com Date: Tue, 7 Jul 2015 13:15:19 +1000 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] (no subject) On the surface it seems like you moved the FS directory from one pathway to another. If you place FS back into your applications folder, it may work. Also, if you have Matlab 2014b or 2015a installed, it won’t work. You need 2012b-2014a for the process to run. Hope this helps in any way. Noah On Jul 7, 2015, at 1:01 PM, jinyi <jiny...@hotmail.com> wrote:Hello Freesurfers I meet a problem in calculate Lgi I run fs in vituralBOX, matlab is installed. At the begining everything seems fine .but error come in "make_outer_surface". The details are in below. ========================================= xubuntu-VirtualBox:~> recon-all -s test001 -localGI WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh! INFO: FreeSurfer build stamps do not match Subject Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 Current Stamp: freesurfer-Linux-centos4-stable-pub-v5.3.0 INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects Actual FREESURFER_HOME /usr/local/freesurfer -rwxrwxrwx 1 fsuser fsuser 495621 Nov 17 2014 /usr/local/freesurfer/subjects/test001/scripts/recon-all.log Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /Applications/freesurfer /usr/local/freesurfer/subjects/test001/surf #-------------------------------------------- #@# Local Gyrification Index lh Mon Jul 6 22:51:12 EDT 2015 mris_compute_lgi --i lh.pial ================= rm -Rf /usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= ERROR:: Too many arguments. _______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferThe information in this e-mail is intended only for the person to whom it isaddressed. If you believe this e-mail was sent to you in error and the e-mailcontains patient information, please contact the Partners Compliance HelpLine athttp://www.partners.org/complianceline . If the e-mail was sent to you in errorbut does not contain patient information, please contact the sender and properlydispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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