Hello Freesurfers
I meet a problem in calculate Lgi
I run fs in vituralBOX, matlab is installed. At the begining everything seems
fine .but error come in "make_outer_surface". The details are in below.
=========================================
xubuntu-VirtualBox:~> recon-all -s test001 -localGI
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Current Stamp: freesurfer-Linux-centos4-stable-pub-v5.3.0
INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects
Actual FREESURFER_HOME /usr/local/freesurfer
-rwxrwxrwx 1 fsuser fsuser 495621 Nov 17 2014
/usr/local/freesurfer/subjects/test001/scripts/recon-all.log
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14
UTC 2012 i686 i686 i386 GNU/Linux
INFO: current FREESURFER_HOME does not match that of previous processing.
Current: /usr/local/freesurfer
Previous: /Applications/freesurfer
/usr/local/freesurfer/subjects/test001/surf
#--------------------------------------------
#@# Local Gyrification Index lh Mon Jul 6 22:51:12 EDT 2015
mris_compute_lgi --i lh.pial
=================
rm -Rf /usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mkdir -p
/usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mris_fill -c -r 1 lh.pial
/usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz
=================
reading surface from lh.pial...
writing filled volume to
/usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz...
conforming output volume
setting resolution for intermediate calculations to 1.0000
=================
make_outer_surface('/usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/usr/local/freesurfer/subjects/test001/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer');
exit
=================
ERROR:: Too many arguments.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
