Hi Jon you need to send us the exact command line you are using for the conversion and the counting
cheers Bruce On Fri, 31 Jul 2015, Jonathan Plasencia wrote: > I've converted the aseg.mgz file to .nii (need data in nii to do some > further work on the data). However, the number of voxels for a given > structure changes when comparing the stats file (from freesurfer) to the > created .nii file. What is happening here? Is there a fix for this? I would > expect the number of voxels for a given structure should be the same between > the stats file and the .nii file. > Note: I get the voxel values in the stats file from the NVoxels column. I > get the voxel values in the generated .nii file by using matlab to count the > number pixels with a given SegId value (i.e. given intensity value). > > > Best, > > Jon > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.