Hi Saeed,
You can run either of the following commands to overlay the ?h.sulc or ?h.curv
file:
tksurfer subject hemisphere surface -snap <file name> -sulc
tksurfer subject hemisphere surface -snap <file name> -curv
Best,
Lee
On Thu, 6 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote:
I used it as this:tksurfer subject hemisphere surface -snap <file name> -overlay
<file name>
And it adds a gray scale version of sulcus map to the plain gray, How can I
activate colors?
Thanks,
Saeed
On Thu, Aug 6, 2015 at 4:20 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
load them as "curvature" files
cheers
Bruce
On Thu, 6 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote:
And are they treated as label files (e.g. lh.aparc.annot ) in the
label
directory? And how they can be added to the tksurfer snapshot
procedure?
On Thu, Aug 6, 2015 at 4:04 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
no, the scalar overlays are stored separately (e.g. lh.curv,
lh.sulc, etc...)
On Thu, 6 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote:
Hello,
Is scalar overlay information embedded into surface
file itself? When I open
them in freeview they are loaded with color overlays
(sulcus/gyrus), but
when I load same models into 3D slicer or take a
snapshot in tksurfer, they
are plain gray.
Thanks,
Saeed
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