Hi Saeed
lh.sulc and lh.curv are scalar overlays, not surfaces. The surfaces are
e.g. lh.inflated, lh.white, lh.pial, etc....
cheers
Bruce
On Fri, 14 Aug 2015, Saeed
Mahdizadeh Bakhshmand wrote:
Hello,
I am trying to load surface overlays in 3D Slicer on top of surface meshes
(e.g. lh.Inflated),
but surface overlays somehow don't load properly into 3D slicer, I am trying
right surface files (lh.sulc , lh.curve e.g.)?
On Fri, Aug 7, 2015 at 10:14 AM, Saeed Mahdizadeh Bakhshmand
<saeedbakhshm...@gmail.com> wrote:
Hi Lee,
Perfect, Thanks.
Saeed
On Thu, Aug 6, 2015 at 5:15 PM, Lee Tirrell
<ltirr...@nmr.mgh.harvard.edu> wrote:
Hi Saeed,
You can run either of the following commands to overlay
the ?h.sulc or ?h.curv file:
tksurfer subject hemisphere surface -snap <file name>
-sulc
tksurfer subject hemisphere surface -snap <file name>
-curv
Best,
Lee
On Thu, 6 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote:
I used it as this:tksurfer subject hemisphere
surface -snap <file name> -overlay <file
name>
And it adds a gray scale version of sulcus map
to the plain gray, How can I activate colors?
Thanks,
Saeed
On Thu, Aug 6, 2015 at 4:20 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
load them as "curvature" files
cheers
Bruce
On Thu, 6 Aug 2015, Saeed Mahdizadeh
Bakhshmand wrote:
And are they treated as label
files (e.g. lh.aparc.annot ) in the label
directory? And how they can be
added to the tksurfer snapshot procedure?
On Thu, Aug 6, 2015 at 4:04 PM,
Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
no, the scalar overlays are
stored separately (e.g. lh.curv,
lh.sulc, etc...)
On Thu, 6 Aug 2015, Saeed
Mahdizadeh Bakhshmand wrote:
Hello,
Is scalar overlay
information embedded into surface
file itself? When I
open
them in freeview they
are loaded with color overlays
(sulcus/gyrus), but
when I load same
models into 3D slicer or take a
snapshot in tksurfer,
they
are plain gray.
Thanks,
Saeed
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