yes, I wish we had the money to fund someone to do this, but alas it is
very hard to get the NIH to fund such an effort
On Fri, 7 Aug 2015, Saeed
Mahdizadeh Bakhshmand wrote:
FS has a lot of hidden capabilities that beginner users (like me) can find
out by reading a proper documentation and save your time for more technical
questions. Documentation doesn't correlate with how great FS and it's
support community is.
On Fri, Aug 7, 2015 at 11:11 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
I guess only by looking at the code. We have tried to flesh out
most of the documentation but have limited resources and
person-power (and funding!) to do so.
sorry
Bruce
On Fri, 7 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote:
Hello Bruce,
Is there any way to access the table of flag
information for mris_sphere?
This page seems to e incomplete in that aspect.
Many Thanks,
Saeed
On Fri, Aug 7, 2015 at 10:36 AM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
Hi Saeed
we normally project onto the sphere, but if
you want to generate
a movie to show the idea you can give
mris_sphere the flag -i,
which will cause it to inflate to the sphere
before unfolding.
cheers
Bruce
On Thu, 6 Aug 2015, Saeed Mahdizadeh
Bakhshmand wrote:
Ok, but how about the mophing process?
Isn't
inflated brain transformed to
the sphere directly? Is there a middle
step that is
hidden (e.g. inflatted
to the brain flat maps and spreading
these maps over
the sphere)? I want to
generate a contineous transformation
video from WM
to inflated and inflated
to a sphere.
On Aug 6, 2015 7:45 PM, "Bruce Fischl"
<fis...@nmr.mgh.harvard.edu> wrote:
yes, because it is unfolding on
the sphere to
recover metric
properties.
-w 1 gives you every iteration.
You will need
to show curvature
or you
won't see anything
On Thu, 6 Aug 2015, Saeed
Mahdizadeh
Bakhshmand wrote:
> Hello,
> What are your suggested values
for w and n
in mris_sphere? I
set w to 5 and
> all of the iterations are
spheres!
>
> Thanks,
> Saeed
>
> On Wed, Aug 5, 2015 at 1:06 PM,
Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
> wrote:
> Hi Saeed
>
> if you specify -w <n> to
mris_inflate
or mris_sphere it
will
> save snapshots
> of the process every nth
iteration
> cheers
> Bruce
>
>
> On Wed, 5 Aug 2015,
> Saeed Mahdizadeh
Bakhshmand wrote:
>
> > Hello,
> >
> > Since surface
deformation from WM to
inflated surface
is a
> gradual process,
> > I assume that interim
surfaces can
also be saved and
> visualized, as I have
> > seen in the ppt of
"Analyzing the
Individual Subject"
tutorial
> session
> > (slide #32). I am
curious to know
which command and
options
> can generate
> > that type of gradual
deformations
from pial surface to
> spherical surface, so
> > that viewer can visually
track
region or points of
interest?
> >
> > Best,
> >
> > Saeed
> >
> >
> >
>
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