Hi Deniz - That cingulum looks way more inferior than it should be. It's hard to tell without being able to see the coronal view. It would make sense to reinitialize a couple of the tracts if the rest of the tracts in the subject look fine, but if they're all shifted inferior then it's a more general problem like misregistration with respect to the MNI template.
Best, a.y On Wed, 10 Feb 2016, denizzgursel wrote: > Dear Anastasia and Tracula users, > > I succesfully ran the longitudinal Tracula procedure for one subject. > However, when I visualized the tracts, they look a bit weird (not smooth). > Even > if I played with the threshold on freeview, I couldn't make them look nice as > in the wiki page. I checked the registration and it looks accurate, so I > am not sure what could be wrong. I am attaching the messy looking tracts for > your reference. > > Could you tell me if I should run again with reinit=1 for these tracts? > > Thank you very much for your time. > Best regards, > > > -- > D. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
