Hi Dorsa why do you think it is going out too far? What intensity volume are you overlaying it on? Many segmentations miss the lateral parts of the thalamus since they have so much myelin in them
cheers Bruce On Wed, 19 Oct 2016, Dorsa Haji Ghaffari wrote: > Hi, > I have done the sub-cortical segmentation in Freesurfer and have extracted > the left thalamus, when I put > it on top of the original MRI, it seems like it is getting out of the border > of thalamus, also it is not > smooth. I wanted to ask if anyone knows how to limit the computation only to > thalamus, and also make it > trace the thalamus more accurately? > > Thank you > > Dorsa > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
