Try not including the "-it dicom" arg and see if that works
On 12/05/2016 10:01 AM, Marianna Riello wrote: > Dear all again, > > Thanks for your reply. > Please check the error attached when trying to convert the DICOM Mosaic in > .mgz file when using mri_convert. > > Thanks in advance, > Marianna > > > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > Sent: Friday, December 2, 2016 12:17 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz > > It will handle mosaics (as the mosaics that fMRI data will come in). > Hard to say what is going on without more specifics (command line, terminal > output) > > > On 12/02/2016 10:26 AM, Marianna Riello wrote: >> Dear all, >> >> I am wondering whether mri_convert can compute .mgz files for the >> reconstructions with the 'Mosaic Format SIEMENS DICOM files'. >> >> I have been computing .mgz with the enhanced format .dcm so far, and >> it always worked. >> >> I have used mri_convert to compute .mgz from .nii (I previously >> transformed the mosaic .dcm format in nifti with mricron but the >> reconstruction failed) >> >> Thanks in advance, >> >> Marianna >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
