Can you upload the dicoms to https://gate.nmr.mgh.harvard.edu/filedrop2
On 12/05/2016 12:09 PM, Marianna Riello wrote: > Dear all, > > Thank you. I tried but still is showing the same error (check 2Error > attachment) > Do you have any other suggestions? > > Thanks in advance, > Marianna > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > Sent: Monday, December 5, 2016 12:00 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz > > Try not including the "-it dicom" arg and see if that works > > > On 12/05/2016 10:01 AM, Marianna Riello wrote: >> Dear all again, >> >> Thanks for your reply. >> Please check the error attached when trying to convert the DICOM Mosaic in >> .mgz file when using mri_convert. >> >> Thanks in advance, >> Marianna >> >> >> >> -----Original Message----- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N >> Greve >> Sent: Friday, December 2, 2016 12:17 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz >> >> It will handle mosaics (as the mosaics that fMRI data will come in). >> Hard to say what is going on without more specifics (command line, >> terminal output) >> >> >> On 12/02/2016 10:26 AM, Marianna Riello wrote: >>> Dear all, >>> >>> I am wondering whether mri_convert can compute .mgz files for the >>> reconstructions with the 'Mosaic Format SIEMENS DICOM files'. >>> >>> I have been computing .mgz with the enhanced format .dcm so far, and >>> it always worked. >>> >>> I have used mri_convert to compute .mgz from .nii (I previously >>> transformed the mosaic .dcm format in nifti with mricron but the >>> reconstruction failed) >>> >>> Thanks in advance, >>> >>> Marianna >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
