Marianna, I think Doug means:
gr...@nmr.mgh.harvard.edu hth d On Tue, Dec 6, 2016 at 10:32 AM, Marianna Riello <mriel...@jhu.edu> wrote: > Yes I did it, I used your mail but it gives me an error. > Check attachment. > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve > Sent: Tuesday, December 6, 2016 10:23 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz > > I did not. You should have had an opportunity to enter an email address of > the recipient. You can use my email > > > On 12/5/16 6:35 PM, Marianna Riello wrote: >> I uploaded the dicom mosaic on Martinos Center. >> I am wondering whether you received it.... >> >> -----Original Message----- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve >> Sent: Monday, December 5, 2016 12:13 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz >> >> Can you upload the dicoms to >> https://gate.nmr.mgh.harvard.edu/filedrop2 >> >> >> On 12/05/2016 12:09 PM, Marianna Riello wrote: >>> Dear all, >>> >>> Thank you. I tried but still is showing the same error (check 2Error >>> attachment) Do you have any other suggestions? >>> >>> Thanks in advance, >>> Marianna >>> >>> -----Original Message----- >>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N >>> Greve >>> Sent: Monday, December 5, 2016 12:00 PM >>> To: freesurfer@nmr.mgh.harvard.edu >>> Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz >>> >>> Try not including the "-it dicom" arg and see if that works >>> >>> >>> On 12/05/2016 10:01 AM, Marianna Riello wrote: >>>> Dear all again, >>>> >>>> Thanks for your reply. >>>> Please check the error attached when trying to convert the DICOM Mosaic in >>>> .mgz file when using mri_convert. >>>> >>>> Thanks in advance, >>>> Marianna >>>> >>>> >>>> >>>> -----Original Message----- >>>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas >>>> N Greve >>>> Sent: Friday, December 2, 2016 12:17 PM >>>> To: freesurfer@nmr.mgh.harvard.edu >>>> Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz >>>> >>>> It will handle mosaics (as the mosaics that fMRI data will come in). >>>> Hard to say what is going on without more specifics (command line, >>>> terminal output) >>>> >>>> >>>> On 12/02/2016 10:26 AM, Marianna Riello wrote: >>>>> Dear all, >>>>> >>>>> I am wondering whether mri_convert can compute .mgz files for the >>>>> reconstructions with the 'Mosaic Format SIEMENS DICOM files'. >>>>> >>>>> I have been computing .mgz with the enhanced format .dcm so far, and >>>>> it always worked. >>>>> >>>>> I have used mri_convert to compute .mgz from .nii (I previously >>>>> transformed the mosaic .dcm format in nifti with mricron but the >>>>> reconstruction failed) >>>>> >>>>> Thanks in advance, >>>>> >>>>> Marianna >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it >>> is addressed. If you believe this e-mail was sent to you in error and the >>> e-mail contains patient information, please contact the Partners Compliance >>> HelpLine at http://www.partners.org/complianceline . If the e-mail was sent >>> to you in error but does not contain patient information, please contact >>> the sender and properly dispose of the e-mail. >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
