Dear FreeSurfer experts I am trying to extract the label using standard aparc.annot and will be using mri_mergelabels to create my own lobes to do GLM fit later on for ROI analysis. However, it shows me the error like this when I check there are the files aparc.annot and the file from surf folder. [toibigi2007@localhost OASIS_Data]$ mri_annotation2label --subject OASIS_0002_MR1 --hemi lh --outdir $SUBJECTS_DIR/OASIS_0002_MR1/label subject = OASIS_0002_MR1 annotation = aparc hemi = lh outdir = /media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label surface = white
ERROR: creating directory /media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label No such file or directory One more question is that it says default is "white" surface, but I want to measure the cortical thickness. Can I leave white in like this or do I change into --surf to gray for this? Thank you and best regards, *--v-- Peace --v--* *Duy Nguyễn * *Biomedical Engineering Department- IU HCMC* *Cell: (+84)909999056* *Email: duy.nguyen...@gmail.com <duy.nguyen...@gmail.com>*
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