Dear Doug Thank you for your quick response. I got the data from oasis website. How can I get the permission to continue my analysis?
Thanks Duy On Fri, May 26, 2017 at 8:46 PM Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > Do you have write permission into that folder? > > The surface is just the surface that the annotation is on. Once you have > your label, you can use it for thickness > > On 5/26/17 3:54 AM, Duy Nguyen wrote: > > Dear FreeSurfer experts > > I am trying to extract the label using standard aparc.annot and will be > using mri_mergelabels to create my own lobes to do GLM fit later on for ROI > analysis. > However, it shows me the error like this when I check there are the files > aparc.annot and the file from surf folder. > [toibigi2007@localhost OASIS_Data]$ mri_annotation2label --subject > OASIS_0002_MR1 --hemi lh --outdir $SUBJECTS_DIR/OASIS_0002_MR1/label > subject = OASIS_0002_MR1 > annotation = aparc > hemi = lh > outdir = /media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label > surface = white > > ERROR: creating directory > /media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label > No such file or directory > > One more question is that it says default is "white" surface, but I want > to measure the cortical thickness. Can I leave white in like this or do I > change into --surf to gray for this? > > Thank you and best regards, > *--v-- Peace --v--* > *Duy Nguyễn * > *Biomedical Engineering Department- IU HCMC* > *Cell: (+84)909999056* > *Email: duy.nguyen...@gmail.com <duy.nguyen...@gmail.com>* > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Sent from Iphone
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