Do you have write permission into that folder?
The surface is just the surface that the annotation is on. Once you have
your label, you can use it for thickness
On 5/26/17 3:54 AM, Duy Nguyen wrote:
Dear FreeSurfer experts
I am trying to extract the label using standard aparc.annot and will
be using mri_mergelabels to create my own lobes to do GLM fit later on
for ROI analysis.
However, it shows me the error like this when I check there are the
files aparc.annot and the file from surf folder.
[toibigi2007@localhost OASIS_Data]$ mri_annotation2label --subject
OASIS_0002_MR1 --hemi lh --outdir $SUBJECTS_DIR/OASIS_0002_MR1/label
subject = OASIS_0002_MR1
annotation = aparc
hemi = lh
outdir = /media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label
surface = white
ERROR: creating directory
/media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label
No such file or directory
One more question is that it says default is "white" surface, but I
want to measure the cortical thickness. Can I leave white in like
this or do I change into --surf to gray for this?
Thank you and best regards,
*--v-- Peace --v--*
*Duy Nguyễn *
*Biomedical Engineering Department- IU HCMC*
*Cell: (+84)909999056*
*Email: duy.nguyen...@gmail.com <mailto:duy.nguyen...@gmail.com>*
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