Hi Douglas
Greve<https://www.mail-archive.com/[email protected]&q=from:%22Douglas+Greve%22>,
Thanks for your support.
I tried with the --reshape-factor 6. But it didn't work for me.
The segmentation was created using the below mentioned data
1. SPM standard ROI
2. .dat file generated using the T1.nii(available in SPM8 template) and
fsaverage.
Please help us to proceed further.
Regards,
Janani
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How did you create the segmentation? You can change the shape of the seg with
mri_surf2surf --reshape 6 --s fsaverage --hemi lh --sval seg.mgh --tval
seg.reshape.mgh
On 7/7/17 10:15 AM, M Janani wrote:
Hi Team,
I'm attempting to extract cortical thickness values for a region-of-interest
(ROI) defined in volume spacesubject for PiB MRI.
I got the below mentioned error while computing the stats value
cwd
cmdline mri_segstats --seg
freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh --in
lh.thickness.fsaverage.mgh --sum segstats-CBLROI.txt
sysname Linux
hostname teslak80
machine x86_64
user lakshman
UseRobust 0
Loading /freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh
Loading lh.thickness.fsaverage.mgh
ERROR: dimension mismatch between input volume and seg
input 27307 1 6
seg 23406 1 7
I tried with the solution provided in the below mail, but it didn't work for me
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-January/027405.html<https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html>
<https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html>
Any help would be really helpful.
Regards,
Janani
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