Can you send me the input volume and seg at our filedrop? https://gate.nmr.mgh.harvard.edu/filedrop2
On 07/17/2017 06:34 AM, M Janani wrote: > Hi Douglas Greve, > Yes, I’m getting the same result as mentioned below. > Regards, > Janani > ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > Did you get exactly the same error? > On 07/14/2017 02:05 AM, M Janani wrote: > > > > Hi Douglas Greve > > <https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+Greve%22>, > > > > Thanks for your support. > > > > I tried with the --reshape-factor 6. But it didn’t work for me. > > > > The segmentation was created using the below mentioned data > > > > 1.SPM standard ROI > > > > 2..dat file generated using the T1.nii(available in SPM8 template) and > > fsaverage. > > > > Please help us to proceed further. > > > > Regards, > > > > Janani > > > > ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- > > > > How did you create the segmentation? You can change the shape of the > > seg with mri_surf2surf --reshape 6 --s fsaverage --hemi lh --sval > > seg.mgh --tval seg.reshape.mgh > > > > On 7/7/17 10:15 AM, M Janani wrote: > > Hi Team, > > > > I'm attempting to extract cortical thickness values for a > > region-of-interest (ROI) defined in volume spacesubject for PiB MRI. > > > > I got the below mentioned error while computing the stats value > > cwd > > > > cmdline mri_segstats --seg > > freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh --in > > lh.thickness.fsaverage.mgh --sum segstats-CBLROI.txt > > > > sysname Linux > > hostname teslak80 > > machine x86_64 > > user lakshman > > UseRobust 0 > > Loading /freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh > > Loading lh.thickness.fsaverage.mgh > > ERROR: dimension mismatch between input volume and seg > > input 27307 1 6 > > seg 23406 1 7 > > > > I tried with the solution provided in the below mail, but it didn’t > > work for me > > > > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-January/027405.html > > > <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html> > > > > <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html> > > > > <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html> > > > > Any help would be really helpful. > > Regards, > > Janani > > ::DISCLAIMER:: > > ---------------------------------------------------------------------------------------------------------------------------------------------------- > > > > The contents of this e-mail and any attachment(s) are confidential and > > intended for the named recipient(s) only. 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Before opening any > > email and/or attachments, please check them for viruses and other > > defects. > > > > ---------------------------------------------------------------------------------------------------------------------------------------------------- > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > The information in this e-mail is intended only for the person to whom > > it is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > > in error > > but does not contain patient information, please contact the sender > > and properly > > dispose of the e-mail. > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
