Hi, Was the following issue ever solved? (sorry hit send too early!) https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html
I tried and, like the previous two people it fails on mri_watershed. https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html Best wishes, Sean Hi Mike it's hard to say without looking at the data. if you upload the subject dir we will take a look Bruce On Thu, 24 Nov 2016, Michael Craig wrote: Hi All, I am trying to run recon-all on the Allen Brain Institute T1 images. It works without any issue on all but one subject (H0351.1009). I saw this post from a few years ago describing the exact problem I’m having, but don’t see a solution. Has anyone figured out how to get this subject to run in recon-all? Or is it simply a matter of there not being enough contrast between grey and white matter? Thanks for the help! https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-July/031482.html Best wishes, Mike On 19 October 2017 at 15:05, Seán Froudist Walsh <froud...@tcd.ie> wrote: > Hi, > > Was the following issue ever solved? > >
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