hi sean, i think i ran those in june 2013 at ohbm. however, my recollection of how it failed is encoded in that mail thread.
it may be worthwhile to just run through those images with freesurfer 6.0. since it's only 6 brains, we can try running it through again. cheers, satra On Thu, Oct 19, 2017 at 3:29 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Seán > > I'm not sure. I think Satra posted the original issue, so maybe he knows. > Satra? > > > cheers > Bruce > On Thu, 19 Oct 2017, Seán Froudist Walsh wrote: > > >> Hi, >> Was the following issue ever solved? (sorry hit send too early!) >> https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html >> I tried and, like the previous two people it fails on mri_watershed. >> https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html >> Best wishes, >> Sean >> >> Hi Mike >> >> it's hard to say without looking at the data. if you upload the >> subject dir we will take a look >> >> Bruce >> On Thu, 24 Nov 2016, Michael Craig wrote: >> >> Hi All, >> I am trying to run recon-all on the Allen Brain Institute T1 images. It >> works >> without any issue on all but one subject (H0351.1009). >> >> I saw this post from a few years ago describing the exact problem I’m >> having, >> but don’t see a solution. Has anyone figured out how to get this subject >> to run >> in recon-all? Or is it simply a matter of there not being enough contrast >> between grey and white matter? Thanks for the help! >> >> https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-J >> uly/031482.html >> >> Best wishes, >> Mike >> >> >> On 19 October 2017 at 15:05, Seán Froudist Walsh <froud...@tcd.ie> wrote: >> Hi, >> Was the following issue ever solved? >> >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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