You can use mri_convert with the --left-right-reverse-pix option On 08/22/2018 02:55 PM, Lutz,Olivia (BIDMC - Psychiatry) wrote: > Hi Doug, > If you are talking about the brainmask, then yes that volume is left-right > reversed as well as the nu.mgz. > > Thanks! > Olivia > > Greve, Douglas N.,Ph.D. > <https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Greve%2C+Douglas+N.%2CPh.D.%22>Mon, > > 20 Aug 2018 14:44:00 -0700 > <https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20180820> > Is the volume actually left-right reversed? > > ________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Lutz,Olivia (BIDMC - > Psychiatry) <ol...@bidmc.harvard.edu> > Sent: Monday, August 20, 2018 4:55:24 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Flipped left to right hemisphere subjects > Hi Doug and Bruce, > > > thank you for the quick reply. As a follow-up question, we've edited our > brainmasks for a dataset and want to flip some subjects left to right. I found > instructions to flip the scans, however they are for the nu.mgz file > (https://surfer.nmr.mgh.harvard.edu/fswiki/LeftRightReversal). Is is possible > to apply this > > mri_convert --in_orientation command to change the left and right labels of > the brainmask so we don't have to re-edit as opposed to applying it to the > nu.mgz file and regenerating the brainmask? > > Thanks! > Olivia > > > > ------------------------------------------------------------------------ > > This message is intended for the use of the person(s) to whom it may > be addressed. It may contain information that is privileged, > confidential, or otherwise protected from disclosure under applicable > law. If you are not the intended recipient, any dissemination, > distribution, copying, or use of this information is prohibited. If > you have received this message in error, please permanently delete it > and immediately notify the sender. Thank you. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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