Can you send the recon-all.log file? On 08/29/2018 04:51 PM, Song, Da-Yea wrote: > External Email - Use Caution > > There is enough disk space and it works fine with the other subjects. But for > a few subjects in particular I seem to get the same error message. I checked > once more and it seems that the rh.white files are being saved in the stats > folder (rather than being in the "surf" folder) . The size of the files are > 0KB. > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N. Greve > Sent: Wednesday, August 29, 2018 4:44 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] MRIread error > > Check permissions first. Look at the size of the file. Is it much smaller > than other rh.white files in other subjects? Have you run out of disk space? > > On 08/29/2018 04:37 PM, Song, Da-Yea wrote: >> External Email - Use Caution >> >> Hi everyone, >> >> I'm trying to pre-process subjects through the pipeline but keep >> getting a handful of subjects that error out within seconds of running >> them. The error message I get is: >> >> MRISread(/subjects/002_1006/surf/rh.white):could not open file >> >> When I go into the subject's folder, I find the rh.white file in the >> stats folder. I've run about 100 subjects without an issue but for >> some reason there are a few subjects that will stop processing with >> the same error message. Any suggestions or comments would be greatly >> appreciated. >> >> Thanks! >> >> Dayea >> >> ---------------------------------------------------------------------- >> -- >> Disclaimer: >> >> >> The materials in this e-mail are private and may contain Protected >> Information. Please note that e-mail communication is not encrypted by >> default. You have the right to request further emails be encrypted by >> notifying the sender. Your continued use of e-mail constitutes your >> acknowledgment of these confidentiality and security limitations. If >> you are not the intended recipient, be advised that any unauthorized >> use, disclosure, copying, distribution, or the taking of any action in >> reliance on the contents of this information is strictly prohibited. >> If you have received this e-mail in error, please immediately notify >> the sender via telephone or return e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harv >> ard.edu_mailman_listinfo_freesurfer&d=DwIF-g&c=-6Xp7zzYCOuh1vlHYMPGlLD >> GrbTByhvtrs9nrrENlxA&r=Ej6I9f50Syd-eFwAKeesOPRE0P9n7bIMdmFlrQs00s8&m=e >> 98J_H-7BF0EKDAVuJ-2kvx3azQNKX1ulVz4U_li3Gk&s=LpELKCdVe1n-qbC8ZUaMHYMLZ >> N3Fra2zLobAGw6K3tI&e= > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=DwIF-g&c=-6Xp7zzYCOuh1vlHYMPGlLDGrbTByhvtrs9nrrENlxA&r=Ej6I9f50Syd-eFwAKeesOPRE0P9n7bIMdmFlrQs00s8&m=e98J_H-7BF0EKDAVuJ-2kvx3azQNKX1ulVz4U_li3Gk&s=LpELKCdVe1n-qbC8ZUaMHYMLZN3Fra2zLobAGw6K3tI&e= > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=DwIF-g&c=-6Xp7zzYCOuh1vlHYMPGlLDGrbTByhvtrs9nrrENlxA&r=Ej6I9f50Syd-eFwAKeesOPRE0P9n7bIMdmFlrQs00s8&m=e98J_H-7BF0EKDAVuJ-2kvx3azQNKX1ulVz4U_li3Gk&s=OWWchzmA_noIdnscfxQPEUfHeGAEL_D8RplFnwNr7j0&e= > . If the e-mail was sent to you in error but does not contain patient > information, please contact the sender and properly dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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