The error message you mention ("... could not open file"). Is not in
this recon-all.log file.
On 08/30/2018 04:23 PM, Song, Da-Yea wrote:
> External Email - Use Caution
>
> I have attached the recon-all.log file for a different subject with the same
> error. Hope this helps!
>
> Thanks,
> Da-yea
>
> -----Original Message-----
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N. Greve
> Sent: Wednesday, August 29, 2018 4:58 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] MRIread error
>
> Can you send the recon-all.log file?
>
> On 08/29/2018 04:51 PM, Song, Da-Yea wrote:
>> External Email - Use Caution
>>
>> There is enough disk space and it works fine with the other subjects. But
>> for a few subjects in particular I seem to get the same error message. I
>> checked once more and it seems that the rh.white files are being saved in
>> the stats folder (rather than being in the "surf" folder) . The size of the
>> files are 0KB.
>>
>> -----Original Message-----
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas
>> N. Greve
>> Sent: Wednesday, August 29, 2018 4:44 PM
>> To: freesurfer@nmr.mgh.harvard.edu
>> Subject: Re: [Freesurfer] MRIread error
>>
>> Check permissions first. Look at the size of the file. Is it much smaller
>> than other rh.white files in other subjects? Have you run out of disk space?
>>
>> On 08/29/2018 04:37 PM, Song, Da-Yea wrote:
>>> External Email - Use Caution
>>>
>>> Hi everyone,
>>>
>>> I'm trying to pre-process subjects through the pipeline but keep
>>> getting a handful of subjects that error out within seconds of
>>> running them. The error message I get is:
>>>
>>> MRISread(/subjects/002_1006/surf/rh.white):could not open file
>>>
>>> When I go into the subject's folder, I find the rh.white file in the
>>> stats folder. I've run about 100 subjects without an issue but for
>>> some reason there are a few subjects that will stop processing with
>>> the same error message. Any suggestions or comments would be greatly
>>> appreciated.
>>>
>>> Thanks!
>>>
>>> Dayea
>>>
>>> ---------------------------------------------------------------------
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>>> v
>>> ard.edu_mailman_listinfo_freesurfer&d=DwIF-g&c=-6Xp7zzYCOuh1vlHYMPGlL
>>> D
>>> GrbTByhvtrs9nrrENlxA&r=Ej6I9f50Syd-eFwAKeesOPRE0P9n7bIMdmFlrQs00s8&m=
>>> e
>>> 98J_H-7BF0EKDAVuJ-2kvx3azQNKX1ulVz4U_li3Gk&s=LpELKCdVe1n-qbC8ZUaMHYML
>>> Z
>>> N3Fra2zLobAGw6K3tI&e=
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>> GrbTByhvtrs9nrrENlxA&r=Ej6I9f50Syd-eFwAKeesOPRE0P9n7bIMdmFlrQs00s8&m=e
>> 98J_H-7BF0EKDAVuJ-2kvx3azQNKX1ulVz4U_li3Gk&s=LpELKCdVe1n-qbC8ZUaMHYMLZ
>> N3Fra2zLobAGw6K3tI&e=
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>> ard.edu_mailman_listinfo_freesurfer&d=DwIGaQ&c=-6Xp7zzYCOuh1vlHYMPGlLD
>> GrbTByhvtrs9nrrENlxA&r=Ej6I9f50Syd-eFwAKeesOPRE0P9n7bIMdmFlrQs00s8&m=a
>> _FXkRCIolWU16gl9K5E9nAuT3Ncvc07n6VJmFq2iOo&s=_vqOKP6s1tFn_d9_2w5CBRnQw
>> KAZsq3Umf53LCRLE5Q&e=
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