External Email - Use Caution Thank you. But the fmri-denoised.nii.gz will be a volume-based data, how can I register and normalize it to the surface-based space, as 'preproc-sess' do that will generate the bilateral cortex in surface and subcortical area in volume?
On Mon, 22 Oct 2018 at 17:12, Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > If you do all the preprocessing yourself, then store the output in the > run folder with a certain name, fmri-denoised.nii.gz, then when you run > mkanalysis-sess specify -funcstem fmri-denoised and proceed as norm. > > On 10/22/2018 04:08 PM, Zhi Li wrote: > > > > External Email - Use Caution > > > > Hi FreeSurfer Experts, > > > > I am trying surface-based analysis of task-fMRI with FS-FAST. However, > > I would like to apply ICA-based denoising and wavelet-despiking which > > can be not done with the 'preproc-sess'. I wonder if I can do the > > preprocessing with other tools before registration with FS anatomical > > and normalization? If it is available, how can I do it with command line? > > > > Another question is if can I use other template for parcellation > > during using 'recon-all', such as the template of Human Connectome > > Project? > > > > Looking forward to your kind reply. > > > > Thank you and best wishes, > > > > Zhi > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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