Hi Atena
what were you hoping would be in the fifth column? What are you hoping to
create your own annotation files from? Can you give us a bigger picture of
what you are trying to achieve?
cheers
Bruce
On Wed, 6 Mar 2019, Atena Rezaei
wrote:
External Email - Use Caution
Hi Bruce,
Thanks for your comment!
I used mri_annotation2label to existed lh.aparc.annot file in label folder
and got the labels. but the labels' text file contain 0 in fifth column.
I need to create atlas from my own data including surface parcellation. how
can I do that? I found commands;
mris_ca_train and mris_ca_label,
how can I make the annotation files from my own data?
BR,
Atena
On Wed, Mar 6, 2019 at 1:10 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Atena
yes, mri_annotation2label should work, although it really
depends on what
you want to do next
cheers
Bruce
On Wed, 6 Mar 2019, Atena Rezaei wrote:
>
> External Email - Use Caution
>
> Hello,
>
> I am trying to extract the cortical parcellation(atlas) file
from freesurfer with all the labels. I found
> the lh.aparc.annot file in label folder. Should I use
mri_annotation2label to create labels? or how can I
> extract the whole file?
> Thanks for ur help!
>
> BR,
> Atena
>
>
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