External Email - Use Caution Hi Bruce,
I am going to extract the cortical parcellation file with its color table from freesurfer then import that in the other interface to detect and visualize the somatosensory (3b broadmann ) area. Therefore, I need the fifth column with some values for vertices. BR, Atena On Wed, Mar 6, 2019 at 5:47 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Atena > > what were you hoping would be in the fifth column? What are you hoping to > create your own annotation files from? Can you give us a bigger picture of > what you are trying to achieve? > > cheers > Bruce > > > On Wed, 6 Mar 2019, Atena Rezaei > wrote: > > > > > External Email - Use Caution > > > > Hi Bruce, > > > > Thanks for your comment! > > I used mri_annotation2label to existed lh.aparc.annot file in label > folder > > and got the labels. but the labels' text file contain 0 in fifth column. > > I need to create atlas from my own data including surface parcellation. > how > > can I do that? I found commands; > > mris_ca_train and mris_ca_label, > > how can I make the annotation files from my own data? > > > > BR, > > Atena > > > > On Wed, Mar 6, 2019 at 1:10 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > > wrote: > > Hi Atena > > > > yes, mri_annotation2label should work, although it really > > depends on what > > you want to do next > > > > cheers > > Bruce > > On Wed, 6 Mar 2019, Atena Rezaei wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello, > > > > > > I am trying to extract the cortical parcellation(atlas) file > > from freesurfer with all the labels. I found > > > the lh.aparc.annot file in label folder. Should I use > > mri_annotation2label to create labels? or how can I > > > extract the whole file? > > > Thanks for ur help! > > > > > > BR, > > > Atena > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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