oh, sorry, I misread your earlier email. The -force in selxavg3-sess
only applies to the post processing. If you want to redo the
preprocessing, then run preproc-sess -force
On 3/13/2020 7:28 PM, Nasiriavanaki, Zahra wrote:
Hi Doug
Thanks for your reply.
Yes, I did.
I run the command from the folder where my analysis which I call
loom.lh is located.
selxavg3-sess -s $subj -d ../all_subjects *-analysis loom.lh* -force
On Mar 13, 2020, at 6:41 PM, Douglas N. Greve <dgr...@mgh.harvard.edu
<mailto:dgr...@mgh.harvard.edu>> wrote:
Did you pass it an analysis? There is not one in that command line
On 3/12/2020 11:28 AM, Nasiriavanaki, Zahra wrote:
Hi Freesurferers
I am trying to run selxavg3-sess for a single subject (3T fMRI
data). Oddly, the terminal output shows that it doesn't need
updating for preprocessing and ends with this: "Started at Thu Mar
12 10:48:09 EDT 2020
Ended at Thu Mar 12 10:48:12 EDT 2020 preproc-sess done". It
seems that it just checks the preprocessing, but does not initiate
the selxavg analysis. There is no error neither selxavg log file.
my command: selxavg3-sess -s $subj -d ../all_subjects -analysis
loom.lh -force
I appreciate any comments on this issue.
Thanks
Mona
*Zahra (Mona) Nasiriavanaki*
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
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