Hi Doug Thanks for your reply. Unfortunately I am still having problem. It’s so odd, because it has never happened with my other subjects before. I attached the log files and I appreciate if you could please take a look. command: selxavg3-sess -s $subj -d ../all_subjects -analysis loom.lh
On Mar 20, 2020, at 10:26 AM, Douglas N. Greve <dgr...@mgh.harvard.edu<mailto:dgr...@mgh.harvard.edu>> wrote: oh, sorry, I misread your earlier email. The -force in selxavg3-sess only applies to the post processing. If you want to redo the preprocessing, then run preproc-sess -force On 3/13/2020 7:28 PM, Nasiriavanaki, Zahra wrote: Hi Doug Thanks for your reply. Yes, I did. I run the command from the folder where my analysis which I call loom.lh is located. selxavg3-sess -s $subj -d ../all_subjects -analysis loom.lh -force On Mar 13, 2020, at 6:41 PM, Douglas N. Greve <dgr...@mgh.harvard.edu<mailto:dgr...@mgh.harvard.edu>> wrote: Did you pass it an analysis? There is not one in that command line On 3/12/2020 11:28 AM, Nasiriavanaki, Zahra wrote: Hi Freesurferers I am trying to run selxavg3-sess for a single subject (3T fMRI data). Oddly, the terminal output shows that it doesn't need updating for preprocessing and ends with this: "Started at Thu Mar 12 10:48:09 EDT 2020 Ended at Thu Mar 12 10:48:12 EDT 2020 preproc-sess done". It seems that it just checks the preprocessing, but does not initiate the selxavg analysis. There is no error neither selxavg log file. my command: selxavg3-sess -s $subj -d ../all_subjects -analysis loom.lh -force I appreciate any comments on this issue. Thanks Mona Zahra (Mona) Nasiriavanaki Postdoctoral Research Fellow Martinos Center for Biomedical Imaging Massachusetts General Hospital 149 13th Street, 149-2615 Charlestown, MA, USA, 02129 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
selxavg3-sess-bold-loom.lh-200320115858.log
Description: selxavg3-sess-bold-loom.lh-200320115858.log
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