Try running it without the -parallel flag. If you want to use multiple
cores, then add -threads N (N= number of cores)
On 7/6/2021 4:29 AM, Susanne Gellißen wrote:
External Email - Use Caution
Dear FreeSurfer Developers,
I am processing MRI data using the freesurfer processing stream with
two timepoints. I already executed the individual
freesurfer-processing for each subject and timepoint and also the
recon-all -base step. All finished without errors.
When running the recon-all -long command, the processing stream exits
at the same step in the script for all subjects and timepoints. I
cannot identify a particular error message (ony at the end the script
says exited with errors and no stats files are produced).
I am using freesurfer 7.1.1 on an iMAc with macOS Catalina.
Please find attached the recon-all log files for the longitudinal
streams (2 folders with “long” in the foldername) as well as for the
preparation steps.
Thank you.
---------------------------------------------------
PD Dr. med. Susanne Gellißen
Department of Diagnostic and Interventional Neuroradiology
University Medical Center Hamburg-Eppendorf
Martinistraße 52, 20246 Hamburg
E-mail: s.siemon...@uke.de
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Universitätsklinikum Hamburg-Eppendorf; Körperschaft des öffentlichen
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Prölß, Prof. Dr. Blanche Schwappach-Pignataro, Marya Verdel
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