External Email - Use Caution Dear Yujing,
I hope this email finds you well. I've checked the directory. /average/colortable_vpnl.txt and ./average/colortable_BA_thresh.txt are both as the same as the ones in the git repo. Also, the label files have been successfully generated in the subject’s label directory. I build this freesurfer on our own aarch64 cpu, with the current source code of git repo. Should I try the source code of 7.4.1? which works well with its x64 binaries on my intel-based cluster, but I'm not sure whether the problem can be solved on this aarch64 cpu. Sincerely, Tianxiang Lyu Graduate School of Medicine, Juntendo University Huang, Yujing <yhuan...@mgh.harvard.edu> 于2024年5月7日周二 21:23写道： > Your recon-all should have generated the following label files in your > subject’s label directory: > > label/?h.FG1.mpm.vpnl.label > > label/?h.FG2.mpm.vpnl.label > > label/?h.FG3.mpm.vpnl.label > > label/?h.FG4.mpm.vpnl.label > > label/?h.hOc1.mpm.vpnl.label > > label/?h.hOc2.mpm.vpnl.label > > label/?h.hOc3v.mpm.vpnl.label > > label/?h.hOc4v.mpm.vpnl.label > > > > I don’t know how you got your Freesurfer distributions. But it looks like > your average/colortable_vpnl.txt is out of sync with mris_label2annot. > > > > 1. download these two colortables from Freesurfer repo - > https://secure-web.cisco.com/1yaJ9rtkF1pEnV3tBbwmzU19ZQQLWvibkvCE5WtM29vK2Qhee6eSfVg9hY75lhno1A0Q0zlRCN9D2we_SqyfSnlM8y0afWtm4g13yqgPYioYdjztyvi6knI0BIwx4sBnX2SY6hXES8QI1F7WNZ8NKk-H6HVwQ4LhI_6wKFlEL023LFxXzlhNLpMPl2TbPyHG_8PIMXBsXRSzfs-4t9DvHm1Z1OX8gSbHtqSvyCTbTo-_KDEaLFQmpTk6buYNbfAxhMv5_0keYI6iPJ7KZIHHjXWdgKEB_7BhnysWX6TbYYwPmizpsRsVGwlF40Ulqm46c/https%3A%2F%2Fgithub.com%2Ffreesurfer%2Ffreesurfer.git > > distribution/average/colortable_BA_thresh.txt > > distribution/average/colortable_vpnl.txt > > 2. copy them to your average/ directory > > > > Best, > > > > Yujing > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *LYU, TIANXIANG > *Sent:* Tuesday, May 7, 2024 12:30 AM > *To:* freesurfer@nmr.mgh.harvard.edu > *Cc:* 内田航 <w-uch...@juntendo.ac.jp> > *Subject:* [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in > CTAB colortable_vpnl.txt > > > > * External Email - Use Caution * > > Hello FreeSurfer Developers, > > I'm attempting to process recon-all commands, but in mris_label2annot > command: > > > > ERROR: FG1.mpm.vpnl not found in CTAB > /vol0004/hp200139/data/u12257/freesurfer/average/colortable_vpnl.txt > Command exited with non-zero status 1 > @#@FSTIME 2024:05:07:07:05:22 mris_label2annot N 26 e 4.35 S 0.34 U 2.65 > P 68% M 203264 F 4 R 3608 W 0 c 0 w 1728 I 18304 O 0 L 0.92 0.91 0.96 > > I've checked the directory, but find nothing strange. (file > colortable_vpnl.txt exists) > > > I've searched the list and no similar errors have been reported. Does > anyone have any thoughts on how to trouble-shoot this one? Also, Ive > attached the recon-all.log in case it's of any use. > > > > Sincerely, > > > > Tianxiang Lyu > > Graduate School of Medicine, > > Juntendo University > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1GzZbRd1dffTkLrKJK6QidwL9T-UH_IXj1m-sB8X0_5BL4XrS2y4CTMcsPM9YWmRI-MmfsFrxRR8RPvEwIg7dpSBAsFy7kNhLcNb52p8nA9CrteuY0vUFcjrozsqf36AgWwTRyay9vbVmtTP41juvkV9rW6M8f4UQHeelWopOsAZYJ5jeMA8cxyGhmAw7tDRJePF8nQgpAV5qvtlhltK2AhWWepEnx0U0TzX0voIvbEwRJO92ew1P278Wio06NfaxndG-NUy_3yC1MBmE3qSU2dUyhPnPQB2XMWc4PkgcUBRlmEawiSJdH1ksEB0nJhO9/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1rc3Wcx-hUywMi198on-n_pvreKl8Pc_rh7eSQsr_yZzIpDWZeG_X6Hxqn4_Cz9dXiXZ84ZXnL6HdEX_Nt7zwCPuOhRtJPgVsCaKEcZqSXp03dy44J8l67FP6GBIPQ81ElR5c7fbk3c2-mBMcd7Jt-deTcd4TcMocTYTDAO1DUFBh94EWxZiTD2HF6sCWqooYta5GeYZWj8jcQGWwdj77dQDKlXKAfhYWRLglZkO8pxEUWsN4vogX5CdjSE-7MDdZz18LBumroQ7csnq7bS9eFRGd7tZVGLQ9RhnKaBlSyzRZULeNCSMhPAVt5905bOUa/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1rc3Wcx-hUywMi198on-n_pvreKl8Pc_rh7eSQsr_yZzIpDWZeG_X6Hxqn4_Cz9dXiXZ84ZXnL6HdEX_Nt7zwCPuOhRtJPgVsCaKEcZqSXp03dy44J8l67FP6GBIPQ81ElR5c7fbk3c2-mBMcd7Jt-deTcd4TcMocTYTDAO1DUFBh94EWxZiTD2HF6sCWqooYta5GeYZWj8jcQGWwdj77dQDKlXKAfhYWRLglZkO8pxEUWsN4vogX5CdjSE-7MDdZz18LBumroQ7csnq7bS9eFRGd7tZVGLQ9RhnKaBlSyzRZULeNCSMhPAVt5905bOUa/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). 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