Hi Janeela, You can convert a batch of coordinates using the Batch Coordinate Conversion(liftOver) tool. From the UCSC Genome Bioinformatics homepage, click on "Utilities" on the left-side navigation menu. On the following page, click on "Batch Coordinate Conversion (liftOver)". After selecting the assemblies of your choice, paste in your coordinates (or upload a file containing the coordinates) and click "Submit". Please note, this tool supports 2 data formats: BED and Position. More information on the BED format can be found here: http://genome.ucsc.edu/goldenPath/help/customTrack.html#BED. Once you have submitted your data, scroll down to "Results" and click on "View Conversions".
Please contact us again at [email protected] if you have any further questions. Best, Luvina --- Luvina Guruvadoo UCSC Genome Bioinformatics Group janeela khan wrote: > Hi, > I am interested in converting the few coordiantes (highly conserved across > species) from chicken assembly to human hg18. I have used in the UCSC browser > the "convert" option inorder to map the region in chicken to hg18 and it > worked perfect. I want to know if there is a way to map a set/batch of > coordinates instead of doing one by one manually? > Thanks in advance. > best/janeela > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
