Hi,
I would like to know why a Neanderthal position in the UCSC browser can be different than in the BAM sequence in the tables section of UCSC. I attached what I had in the browser. My concern is about position 163076840 on chr4 (rs1872067). Here is the sequence that I obtained for human: >hg18_snp130_rs1872067 range=chr4:163076830-163076850 5'pad=10 3'pad=10 strand=+ repeatMasking=none AATGAAAGTT C TTTTGCATAT Here is the sequence that I obtained for Neanderthal Vi33.26 which seem to be the only one with a sequence for this position: >hg18_bamSLVi33dot26_C_M_SOLEXA-GA02_JK_PE51_SL29_SL30_SL31_rep:3:87:1372:18 37 range=chr4:163076828-163076901 5'pad=10 3'pad=10 strand=+ repeatMasking=none GCAATGAAAGTT C TTTTGCATATATCTACACATATACATAATTTACATAATCTAAGTGTGTGTATGTATGTGTA Here is the sequence that I obtained for Neanderthal ctg which is the same as Vi33.26: >hg18_bamAll_all-hg18_11118948 range=chr4:163076828-163076901 5'pad=10 3'pad=10 strand=+ repeatMasking=none GCAATGAAAGTT C TTTTGCATATATCTACACATATACATAATTTACATAATCTAAGTGTGTGTATGTATGTGTA Thanks a lot, Claudia Moreau Assistante de recherche, laboratoire de génétique des populations Hôpital Ste-Justine 3175 Chemin de la Côte-Ste-Catherine, pavillon Charles-Bruneau B-477 Montréal H3T 1C5 tel: 514-345-4931 ext 2974 FAX: 514-345-4731
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