Hi Jelena, The GENECODE Genes track and Vega Genes track both contain pseudogene subtracks. Please see the following track description pages for more information: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGencodeV7 http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=vegaGeneComposite
There is also a track available on our preview server which may be useful for you: http://genome-preview.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=ucscRetroAli1 Please keep in mind this track has not yet been reviewed by the quality assurance team and may undergo some changes; in general, the preview server has a lot of untested and experimental tracks. Please contact us again at [email protected] if you have further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 9/13/2011 3:24 PM, Brezo, Jelena wrote: > Hi, > > Does UCSC have a feature that lists pseudogenes associated with a given gene? > Do you know if pseudogene naming nomenclature is such that they can be easily > differentiated from working genes? > If UCSC does not have a pseudogene track, do you know who would have such a > feature? The pseudogene.org database seems cumbersome to use and I am not > seeing direction on how to use it anyway, although I have contacted the > author. > > > Thanks very much, Jelena > > > > > --------------------------------------------------------------------- > *SECURITY/CONFIDENTIALITY WARNING: > This message and any attachments are intended solely for the individual or > entity to which they are addressed. This communication may contain > information that is privileged, confidential, or exempt from disclosure under > applicable law (e.g., personal health information, research data, financial > information). Because this e-mail has been sent without encryption, > individuals other than the intended recipient may be able to view the > information, forward it to others or tamper with the information without the > knowledge or consent of the sender. If you are not the intended recipient, or > the employee or person responsible for delivering the message to the intended > recipient, any dissemination, distribution or copying of the communication is > strictly prohibited. If you received the communication in error, please > notify the sender immediately by replying to this message and deleting the > message and any accompanying files from your system. If, due to the security > risks, you do not ! wi > ! > sh to receive further communications via e-mail, please reply to this > message and inform the sender that you do not wish to receive further e-mail > from the sender. > > --------------------------------------------------------------------- > > _______________________________________________ > Genome maillist [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
