Hello Jun, The fragment you reference is actually from the Celera rat assembly which we do not host. Judging by this listing for the identifier you included:
http://mirrors.vbi.vt.edu/mirrors/ftp.ncbi.nih.gov/genomes/R_norvegicus/ARCHIVE/BUILD.4.1/scaffold_names it looks like the genbank identifier for your fragnment is CH473987.2. Using the genbank identifier you should be able to get that sequence from genbank. Best of luck with the rest of your research. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 6/12/12 8:13 PM, Junichi Asakawa wrote: > To whom concerned, > > I have been working on genetic risk estimate of radiation on mice, rats and > human. > I screened a total of 3,000 RERF (2-D electrophoresis of NotI fragments) gels > prepared > from > F1 rats born to the cross of SD x BN rats. Now I am characterizing mutant DNA > fragments detected. > One of my fragments Blast hit with Celera assembly; >> ref|NW001084880.1|Rn9_WGA2712_4 > I have another DNA clone sequence which did hit only with Celera assembly > I appreciate very much if you teach me how I can get the Ref. Sequence? > > Best regards, > > Jun > > > Jun-ichi Asakawa, Ph. D. > Senior Scientist > Department of Genetics > Radiation Effects Research Foundation > 5-2 Hijiyama-Park, Minami-ku > Hiroshima 732-0815, Japan > Fax: 81-82-263-7279 > E-mail: [email protected] > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
