Hello, Srinivas. You can find the tracks you're interested in by performing a track search. To do so, perform the following steps:
1. Browse to http://genome.ucsc.edu 2. Click "Genomes" in the blue navigation bar at the top 3. Make sure "Clade", "Genome" and "Assembly" are set to "Mammal", "Human" and "Feb. 2009 (GRCh37/hg19)" 4. Just beneath that, click the "track search" button 5. Click the "Advanced" tab of the track search 6. On the "Cell, tissue or DNA sample" line, select the cell line(s) you are interested in (e.g., Osteoblasts, etc) 7. On the "Antibody or target protein" line, select the antibody or target protein(s) you are interested in (e.g., H3K4me1, H3K4me3, etc) 8. To the left of "Antibody or target protein", click the "+" button to add another line 9. Change the dropdown box on the new line to "Experiment (Assay) type" 10. On the "Experiment (Assay) type" line, select "ChIP-seq" 11. Click the "search" button 12. A list of tracks matching your criteria will be displayed. Check the checkboxes next to the tracks you are interested in. 13. Click the "View in Browser" button to view these tracks in the Browser. When you are viewing your cell lines in the Browser, you can edit the "position/search" box at the top to view the regions you are interested in. For example, if you were interested in a particular region on chromosome 10, you might enter something like "chr10:58,083,942-58,172,742" in the "position/search" box. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of srinivas naidu kovvali Sent: Monday, April 23, 2012 10:34 AM To: [email protected] Subject: Re: [Genome] (no subject) > ** ** > > Dear Dr. Sir/Madam > > despite many mail communications with your kind self , it seems i > could not convey my queries in a understandable manner to you. now > its my peak time, i still have some doubts using methylation tracts. > So, i want to request you for your help > > briefly can you be able to analyze 7 sites (each site not more than 80 > nucleotides ) from chromosome 10, chromosome 11 and tell me what kind > of methylation is present in each cell line. i am interested only in > methylation details from skeletalmyoctes, enmryonic stem cells, > umblical vein endothelial cells, lymphoblastoid , osteoblast cells > (where ever data is present ) cell lines. this help will greatly > enhance my work and research. > > > hope to hear a positive reply from you > > thanking you > > sincerely > > srinivas kovvali > > > -- > Srinivas Kovvali J.R.F**** > > Anthropological Survey of India,**** > > Southern Regional center, **** > > Mysore **** > > ** ** > -- Srinivas Kovvali J.R.F Anthropological Survey of India, Southern Regional center, Mysore _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
